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  5. Cre13.g570050

Cre13.g570050


Description : Chromatin organisation.histones.H2B-type histone


Gene families : OG_01_0000046 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre13.g570050
Cluster HCCA: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
AT1G07790 No alias Histone superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G37470 No alias Histone superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G45980 No alias Histone superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G46030 No alias Histone superfamily protein 0.27 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G22880 No alias histone B2 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G59910 No alias Histone superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g13450.1 No alias histone (H2B) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g04070.1 No alias histone (H2B) 0.5 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g07010.1 No alias histone (H2B) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_7610V3.1 No alias Histone superfamily protein 0.4 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_23540V3.1 No alias Histone superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_21050V3.1 No alias Histone superfamily protein 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_15780V3.1 No alias Histone superfamily protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_15800V3.1 No alias Histone superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_27740V3.1 No alias Histone superfamily protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12003.1 No alias histone (H2B) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 20 132
No external refs found!