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Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS16 component
Gene families : OG_01_0001151 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001151_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cre13.g573351 | |
| Cluster | HCCA: Cluster_93 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G09990 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.26 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Mp1g07720.1 | No alias | component RPS16 of SSU proteome | 0.35 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Mp1g14290.1 | No alias | component RPS16 of SSU proteome | 0.39 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c18_1350V3.1 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.33 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c19_22410V3.1 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.43 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c21_20630V3.1 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.35 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c22_21090V3.1 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.41 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c9_4180V3.1 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.33 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_04605.1 | No alias | component uS9 of SSU proteome | 0.05 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
| CC | GO:0005840 | ribosome | IEA | Interproscan |
| BP | GO:0006412 | translation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| CC | GO:0005622 | intracellular anatomical structure | IEP | HCCA |
| CC | GO:0015934 | large ribosomal subunit | IEP | HCCA |
| MF | GO:0019843 | rRNA binding | IEP | HCCA |
| CC | GO:0044391 | ribosomal subunit | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000754 | Ribosomal_S9 | 10 | 142 |
| No external refs found! |