Cre13.g581650

Description : Protein biosynthesis.organelle translation machineries.plastidial ribosome.large subunit proteome.psRPL12 component

Gene families : OG_01_0001217 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001217_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cre13.g581650
Cluster	HCCA: Cluster_80

Target	Alias	Description	ECC score	Gene Family Method
AT3G27830	No alias	ribosomal protein L12-A	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G27850	No alias	ribosomal protein L12-C	0.14	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g15720.1	No alias	component psRPL12 of large ribosomal subunit proteome	0.25	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_2080V3.1	No alias	ribosomal protein L12-C	0.14	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_1440V3.1	No alias	ribosomal protein L12-C	0.22	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c26_10990V3.1	No alias	ribosomal protein L12-A	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24130V3.1	No alias	ribosomal protein L12-C	0.27	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_2700V3.1	No alias	ribosomal protein L12-C	0.16	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_00374.1	No alias	component bL12c of large ribosomal subunit proteome	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003747	translation release factor activity	IEP	HCCA
MF	GO:0004045	aminoacyl-tRNA hydrolase activity	IEP	HCCA
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006415	translational termination	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
MF	GO:0008079	translation termination factor activity	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015035	protein-disulfide reductase activity	IEP	HCCA
MF	GO:0015036	disulfide oxidoreductase activity	IEP	HCCA
CC	GO:0015934	large ribosomal subunit	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0022411	cellular component disassembly	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0032984	protein-containing complex disassembly	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0034613	cellular protein localization	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043624	cellular protein complex disassembly	IEP	HCCA
BP	GO:0043933	protein-containing complex subunit organization	IEP	HCCA
CC	GO:0044391	ribosomal subunit	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
MF	GO:0070402	NADPH binding	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008932	Ribosomal_L7/L12_oligo	37	86
IPR013823	Ribosomal_L7/L12_C	95	161

External Links

No external refs found!

Cre13.g581650

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation