AT1G51290

Description : F-box and associated interaction domains-containing protein

Gene families : OG_01_0000237 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000237_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G51290
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AT1G12170	No alias	F-box family protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G32430	No alias	F-box and associated interaction domains-containing protein	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G47390	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G51320	No alias	F-box and associated interaction domains-containing protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G58090	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G59630	No alias	F-box associated ubiquitination effector family protein	0.05	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G14710	No alias	F-box family protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G17310	No alias	F-box and associated interaction domains-containing protein	0.07	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G16580	No alias	F-box and associated interaction domains-containing protein	0.08	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G16590	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G18340	No alias	F-box and associated interaction domains-containing protein	0.1	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G21410	No alias	F-box and associated interaction domains-containing protein	0.11	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G51171	No alias	F-box and associated interaction domains-containing protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G37040	No alias	F-box family protein	0.09	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	TAS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	HCCA
MF	GO:0004022	alcohol dehydrogenase (NAD+) activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0009008	DNA-methyltransferase activity	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
MF	GO:0009824	AMP dimethylallyltransferase activity	IEP	HCCA
MF	GO:0018455	alcohol dehydrogenase [NAD(P)+] activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0052622	ATP dimethylallyltransferase activity	IEP	HCCA
MF	GO:0052623	ADP dimethylallyltransferase activity	IEP	HCCA
BP	GO:0060688	regulation of morphogenesis of a branching structure	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1905428	regulation of plant organ formation	IEP	HCCA
BP	GO:2000032	regulation of secondary shoot formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006527	F-box-assoc_dom_typ1	188	360
IPR001810	F-box_dom	5	43

External Links

PLAZA 3.0 Dicots	AT1G51290

AT1G51290

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation