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  5. Cre14.g615500

Cre14.g615500


Description : RNA processing.RNA modification.tRNA N6-threonylcarbamoylation.mitochondrial tRNA threonylcarbamoyl transferase


Gene families : OG_01_0004714 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004714_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre14.g615500
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
AT2G45270 No alias glycoprotease 1 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g12690.1 No alias mitochondrial tRNA threonylcarbamoyl transferase 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_10750V3.1 No alias glycoprotease 1 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000905 Gcp-like_dom 161 271
IPR000905 Gcp-like_dom 405 606
No external refs found!