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  5. Cre14.g626634

Cre14.g626634


Description : tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza sativa subsp. japonica


Gene families : OG_01_0004356 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre14.g626634
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AT4G04670 No alias Met-10+ like family protein / kelch repeat-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g18470.1 No alias tRNA wybutosine-synthesizing protein 2/3/4 OS=Oryza... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_15020V3.1 No alias Met-10+ like family protein / kelch repeat-containing protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR030382 MeTrfase_TRM5/TYW2 1372 1460
IPR003827 tRNA_yW-synthesising 27 220
No external refs found!