1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G52650

AT1G52650


Description : F-box/RNI-like superfamily protein


Gene families : OG_01_0000021 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G52650
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT1G19070 No alias F-box family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G64540 No alias F-box/FBD-like domains containing protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G29930 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G42720 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G42770 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G54160 No alias RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G58860 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59230 No alias RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G59240 No alias RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G62440 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G00320 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G22280 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G15620 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G25860 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G35926 No alias Protein with RNI-like/FBD-like domains 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38392 No alias No description available 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G38396 No alias F-box/RNI-like superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G41630 No alias F-box/RNI-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001872 (1->3)-beta-D-glucan binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004177 aminopeptidase activity IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006323 DNA packaging IEP HCCA
CC GO:0008278 cohesin complex IEP HCCA
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP HCCA
BP GO:0010032 meiotic chromosome condensation IEP HCCA
BP GO:0010440 stomatal lineage progression IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
CC GO:0031226 intrinsic component of plasma membrane IEP HCCA
MF GO:0033558 protein deacetylase activity IEP HCCA
CC GO:0046658 anchored component of plasma membrane IEP HCCA
BP GO:0048240 sperm capacitation IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051177 meiotic sister chromatid cohesion IEP HCCA
BP GO:0051316 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation IEP HCCA
BP GO:0051455 monopolar spindle attachment to meiosis I kinetochore IEP HCCA
BP GO:0051754 meiotic sister chromatid cohesion, centromeric IEP HCCA
BP GO:0060341 regulation of cellular localization IEP HCCA
BP GO:0070601 centromeric sister chromatid cohesion IEP HCCA
BP GO:0080154 regulation of fertilization IEP HCCA
BP GO:0080155 regulation of double fertilization forming a zygote and endosperm IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097472 cyclin-dependent protein kinase activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:2000008 regulation of protein localization to cell surface IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 46 80
PLAZA 3.0 Dicots AT1G52650