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  5. Cre16.g679600

Cre16.g679600


Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2A snRNP component


Gene families : OG_01_0002462 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002462_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g679600
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AT1G09760 No alias U2 small nuclear ribonucleoprotein A 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp1g11620.1 No alias protein factor U2A of U2 small nuclear ribonucleoprotein... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_1630V3.1 No alias U2 small nuclear ribonucleoprotein A 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_20060V3.1 No alias U2 small nuclear ribonucleoprotein A 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004817 cysteine-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006423 cysteinyl-tRNA aminoacylation IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!