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  5. Cre16.g680900

Cre16.g680900


Description : RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol II catalytic subunits.subunit 1


Gene families : OG_01_0005123 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005123_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre16.g680900
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AT4G35800 No alias RNA polymerase II large subunit 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g14340.1 No alias subunit 1 of Pol II RNA polymerase 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0004190 aspartic-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0070001 aspartic-type peptidase activity IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
InterPro domains Description Start Stop
IPR000684 RNA_pol_II_repeat_euk 1630 1643
IPR000684 RNA_pol_II_repeat_euk 1707 1720
IPR000684 RNA_pol_II_repeat_euk 1616 1629
IPR000684 RNA_pol_II_repeat_euk 1526 1538
IPR000684 RNA_pol_II_repeat_euk 1539 1552
IPR000684 RNA_pol_II_repeat_euk 1567 1580
IPR000684 RNA_pol_II_repeat_euk 1686 1699
IPR000684 RNA_pol_II_repeat_euk 1637 1650
IPR000684 RNA_pol_II_repeat_euk 1581 1594
IPR000684 RNA_pol_II_repeat_euk 1595 1608
IPR000684 RNA_pol_II_repeat_euk 1651 1664
IPR000684 RNA_pol_II_repeat_euk 1700 1713
IPR000684 RNA_pol_II_repeat_euk 1602 1615
IPR000684 RNA_pol_II_repeat_euk 1609 1622
IPR000684 RNA_pol_II_repeat_euk 1560 1573
IPR000684 RNA_pol_II_repeat_euk 1672 1685
IPR000684 RNA_pol_II_repeat_euk 1588 1601
IPR000684 RNA_pol_II_repeat_euk 1658 1671
IPR000684 RNA_pol_II_repeat_euk 1644 1657
IPR000684 RNA_pol_II_repeat_euk 1623 1636
IPR000684 RNA_pol_II_repeat_euk 1574 1587
IPR000684 RNA_pol_II_repeat_euk 1553 1566
IPR007080 RNA_pol_Rpb1_1 15 328
IPR000722 RNA_pol_asu 330 498
IPR007066 RNA_pol_Rpb1_3 501 664
IPR007081 RNA_pol_Rpb1_5 802 1396
IPR007073 RNA_pol_Rpb1_7 1138 1265
IPR007083 RNA_pol_Rpb1_4 690 795
IPR007075 RNA_pol_Rpb1_6 868 1051
No external refs found!