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  5. AT1G53120

AT1G53120


Description : RNA-binding S4 domain-containing protein


Gene families : OG_01_0007277 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0007277_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G53120
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
Cre12.g502950 No alias No description available 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05754.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0000064 L-ornithine transmembrane transporter activity IEP HCCA
MF GO:0003941 L-serine ammonia-lyase activity IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
MF GO:0004133 glycogen debranching enzyme activity IEP HCCA
MF GO:0004150 dihydroneopterin aldolase activity IEP HCCA
MF GO:0004326 tetrahydrofolylpolyglutamate synthase activity IEP HCCA
MF GO:0004556 alpha-amylase activity IEP HCCA
MF GO:0004693 cyclin-dependent protein serine/threonine kinase activity IEP HCCA
MF GO:0005080 protein kinase C binding IEP HCCA
MF GO:0005290 L-histidine transmembrane transporter activity IEP HCCA
MF GO:0005319 lipid transporter activity IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006152 purine nucleoside catabolic process IEP HCCA
BP GO:0006154 adenosine catabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006760 folic acid-containing compound metabolic process IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
BP GO:0006897 endocytosis IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008169 C-methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0008285 negative regulation of cell population proliferation IEP HCCA
MF GO:0008721 D-serine ammonia-lyase activity IEP HCCA
MF GO:0008864 formyltetrahydrofolate deformylase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009123 nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP HCCA
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP HCCA
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009164 nucleoside catabolic process IEP HCCA
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP HCCA
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
BP GO:0009965 leaf morphogenesis IEP HCCA
BP GO:0010021 amylopectin biosynthetic process IEP HCCA
BP GO:0010190 cytochrome b6f complex assembly IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP HCCA
CC GO:0010368 chloroplast isoamylase complex IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015173 aromatic amino acid transmembrane transporter activity IEP HCCA
MF GO:0015174 basic amino acid transmembrane transporter activity IEP HCCA
MF GO:0015179 L-amino acid transmembrane transporter activity IEP HCCA
MF GO:0015189 L-lysine transmembrane transporter activity IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016832 aldehyde-lyase activity IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016841 ammonia-lyase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
MF GO:0017118 lipoyltransferase activity IEP HCCA
MF GO:0019156 isoamylase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
MF GO:0030378 serine racemase activity IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031969 chloroplast membrane IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0032365 intracellular lipid transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
CC GO:0042170 plastid membrane IEP HCCA
BP GO:0042180 cellular ketone metabolic process IEP HCCA
BP GO:0042181 ketone biosynthetic process IEP HCCA
BP GO:0042278 purine nucleoside metabolic process IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042371 vitamin K biosynthetic process IEP HCCA
BP GO:0042372 phylloquinone biosynthetic process IEP HCCA
BP GO:0042373 vitamin K metabolic process IEP HCCA
BP GO:0042374 phylloquinone metabolic process IEP HCCA
BP GO:0042454 ribonucleoside catabolic process IEP HCCA
BP GO:0042558 pteridine-containing compound metabolic process IEP HCCA
CC GO:0043033 isoamylase complex IEP HCCA
BP GO:0044257 cellular protein catabolic process IEP HCCA
BP GO:0045036 protein targeting to chloroplast IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045962 positive regulation of development, heterochronic IEP HCCA
BP GO:0046085 adenosine metabolic process IEP HCCA
BP GO:0046128 purine ribonucleoside metabolic process IEP HCCA
BP GO:0046130 purine ribonucleoside catabolic process IEP HCCA
BP GO:0046416 D-amino acid metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0048481 plant ovule development IEP HCCA
MF GO:0052624 2-phytyl-1,4-naphthoquinone methyltransferase activity IEP HCCA
BP GO:0070178 D-serine metabolic process IEP HCCA
BP GO:0072523 purine-containing compound catabolic process IEP HCCA
BP GO:0072596 establishment of protein localization to chloroplast IEP HCCA
BP GO:0072598 protein localization to chloroplast IEP HCCA
BP GO:0090351 seedling development IEP HCCA
MF GO:0097472 cyclin-dependent protein kinase activity IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
MF GO:1901474 azole transmembrane transporter activity IEP HCCA
BP GO:1901658 glycosyl compound catabolic process IEP HCCA
BP GO:1901661 quinone metabolic process IEP HCCA
BP GO:1901663 quinone biosynthetic process IEP HCCA
BP GO:2000896 amylopectin metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 246 291
PLAZA 3.0 Dicots AT1G53120