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  5. AT1G53330

AT1G53330


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000212 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G53330
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT1G02060 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G05600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G07740 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G11630 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G71210 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G74580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G80150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G17670 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G18520 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G38420 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G09060 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G14580 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G53700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G01400 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G11690 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G36680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0010154 fruit development IMP Interproscan
BP GO:0048364 root development IMP Interproscan
BP GO:0048367 shoot system development IMP Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0009627 systemic acquired resistance IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 326 374
IPR002885 Pentatricopeptide_repeat 150 199
IPR002885 Pentatricopeptide_repeat 257 304
IPR002885 Pentatricopeptide_repeat 225 247
IPR002885 Pentatricopeptide_repeat 85 113
PLAZA 3.0 Dicots AT1G53330