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  5. AT1G53460

AT1G53460


Description : BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT1G70650.2); Has 485 Blast hits to 413 proteins in 88 species: Archae - 11; Bacteria - 27; Metazoa - 119; Fungi - 17; Plants - 101; Viruses - 2; Other Eukaryotes - 208 (source: NCBI BLink).


Gene families : OG_01_0016001 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G53460
Cluster HCCA: Cluster_38


Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000811 GINS complex IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0004396 hexokinase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005093 Rab GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005337 nucleoside transmembrane transporter activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005674 transcription factor TFIIF complex IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006352 DNA-templated transcription, initiation IEP HCCA
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
MF GO:0008901 ferredoxin hydrogenase activity IEP HCCA
BP GO:0009432 SOS response IEP HCCA
BP GO:0010082 regulation of root meristem growth IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010225 response to UV-C IEP HCCA
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0015858 nucleoside transport IEP HCCA
BP GO:0015864 pyrimidine nucleoside transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0016695 oxidoreductase activity, acting on hydrogen as donor IEP HCCA
MF GO:0016699 oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
BP GO:0016925 protein sumoylation IEP HCCA
MF GO:0016929 SUMO-specific protease activity IEP HCCA
MF GO:0019003 GDP binding IEP HCCA
MF GO:0019789 SUMO transferase activity IEP HCCA
BP GO:0030422 production of siRNA involved in RNA interference IEP HCCA
BP GO:0031050 dsRNA processing IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
CC GO:0031261 DNA replication preinitiation complex IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP HCCA
CC GO:0031307 integral component of mitochondrial outer membrane IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
CC GO:0032592 integral component of mitochondrial membrane IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
MF GO:0050566 asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
MF GO:0051879 Hsp90 protein binding IEP HCCA
BP GO:0060249 anatomical structure homeostasis IEP HCCA
BP GO:0060250 germ-line stem-cell niche homeostasis IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP HCCA
BP GO:0070919 production of siRNA involved in gene silencing by small RNA IEP HCCA
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080038 positive regulation of cytokinin-activated signaling pathway IEP HCCA
CC GO:0098573 intrinsic component of mitochondrial membrane IEP HCCA
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP HCCA
BP GO:2000539 regulation of protein geranylgeranylation IEP HCCA
BP GO:2000541 positive regulation of protein geranylgeranylation IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT1G53460