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  5. AT1G53490

AT1G53490


Description : RING/U-box superfamily protein


Gene families : OG_01_0002118 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G53490
Cluster HCCA: Cluster_11


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005694 chromosome IDA Interproscan
BP GO:0035825 homologous recombination IMP Interproscan
BP GO:0051026 chiasma assembly IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000103 sulfate assimilation IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0000302 response to reactive oxygen species IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0002218 activation of innate immune response IEP HCCA
BP GO:0002252 immune effector process IEP HCCA
BP GO:0002253 activation of immune response IEP HCCA
BP GO:0002679 respiratory burst involved in defense response IEP HCCA
BP GO:0002682 regulation of immune system process IEP HCCA
BP GO:0002684 positive regulation of immune system process IEP HCCA
BP GO:0002831 regulation of response to biotic stimulus IEP HCCA
BP GO:0002833 positive regulation of response to biotic stimulus IEP HCCA
MF GO:0003933 GTP cyclohydrolase activity IEP HCCA
MF GO:0003935 GTP cyclohydrolase II activity IEP HCCA
MF GO:0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity IEP HCCA
MF GO:0004843 thiol-dependent deubiquitinase IEP HCCA
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP HCCA
MF GO:0005275 amine transmembrane transporter activity IEP HCCA
CC GO:0005652 nuclear lamina IEP HCCA
CC GO:0005851 eukaryotic translation initiation factor 2B complex IEP HCCA
BP GO:0005985 sucrose metabolic process IEP HCCA
BP GO:0006355 regulation of transcription, DNA-templated IEP HCCA
BP GO:0006446 regulation of translational initiation IEP HCCA
BP GO:0006638 neutral lipid metabolic process IEP HCCA
BP GO:0006639 acylglycerol metabolic process IEP HCCA
BP GO:0006641 triglyceride metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006820 anion transport IEP HCCA
BP GO:0006865 amino acid transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
MF GO:0008242 omega peptidase activity IEP HCCA
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009723 response to ethylene IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009738 abscisic acid-activated signaling pathway IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009756 carbohydrate mediated signaling IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009867 jasmonic acid mediated signaling pathway IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0009931 calcium-dependent protein serine/threonine kinase activity IEP HCCA
BP GO:0009933 meristem structural organization IEP HCCA
BP GO:0009970 cellular response to sulfate starvation IEP HCCA
MF GO:0009973 adenylyl-sulfate reductase activity IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010052 guard cell differentiation IEP HCCA
BP GO:0010071 root meristem specification IEP HCCA
BP GO:0010078 maintenance of root meristem identity IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
MF GO:0010178 IAA-amino acid conjugate hydrolase activity IEP HCCA
MF GO:0010179 IAA-Ala conjugate hydrolase activity IEP HCCA
BP GO:0010182 sugar mediated signaling pathway IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0010857 calcium-dependent protein kinase activity IEP HCCA
BP GO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0015804 neutral amino acid transport IEP HCCA
BP GO:0015824 proline transport IEP HCCA
BP GO:0015849 organic acid transport IEP HCCA
BP GO:0016032 viral process IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019238 cyclohydrolase activity IEP HCCA
BP GO:0019379 sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) IEP HCCA
BP GO:0019419 sulfate reduction IEP HCCA
BP GO:0019432 triglyceride biosynthetic process IEP HCCA
BP GO:0019915 lipid storage IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031349 positive regulation of defense response IEP HCCA
BP GO:0032101 regulation of response to external stimulus IEP HCCA
BP GO:0032103 positive regulation of response to external stimulus IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
BP GO:0042542 response to hydrogen peroxide IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0042762 regulation of sulfur metabolic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0044000 movement in host IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044766 multi-organism transport IEP HCCA
BP GO:0045088 regulation of innate immune response IEP HCCA
BP GO:0045089 positive regulation of innate immune response IEP HCCA
BP GO:0045597 positive regulation of cell differentiation IEP HCCA
BP GO:0045730 respiratory burst IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046460 neutral lipid biosynthetic process IEP HCCA
BP GO:0046463 acylglycerol biosynthetic process IEP HCCA
BP GO:0046739 transport of virus in multicellular host IEP HCCA
BP GO:0046740 transport of virus in host, cell to cell IEP HCCA
BP GO:0046794 transport of virus IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
BP GO:0048532 anatomical structure arrangement IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
BP GO:0050776 regulation of immune response IEP HCCA
BP GO:0050778 positive regulation of immune response IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051235 maintenance of location IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051701 biological process involved in interaction with host IEP HCCA
BP GO:0051782 negative regulation of cell division IEP HCCA
BP GO:0052126 movement in host environment IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
BP GO:0061077 chaperone-mediated protein folding IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080022 primary root development IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1901989 positive regulation of cell cycle phase transition IEP HCCA
BP GO:1901992 positive regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902456 regulation of stomatal opening IEP HCCA
BP GO:1902579 multi-organism localization IEP HCCA
BP GO:1902586 multi-organism intercellular transport IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1902751 positive regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 2 43
PLAZA 3.0 Dicots AT1G53490