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  5. Cre17.g717800

Cre17.g717800


Description : Protein translocation.nucleus.nucleocytoplasmic transport.nuclear pore complex (NPC).linker subcomplex.NUP93 scaffold nucleoporin


Gene families : OG_01_0006852 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006852_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g717800
Cluster HCCA: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
AT2G41620 No alias Nucleoporin interacting component (Nup93/Nic96-like)... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g23730.1 No alias NUP93 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_19740V3.1 No alias Nucleoporin interacting component (Nup93/Nic96-like)... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP HCCA
CC GO:0005801 cis-Golgi network IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
MF GO:0008521 acetyl-CoA transmembrane transporter activity IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015215 nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP HCCA
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
MF GO:1901682 sulfur compound transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR007231 Nucleoporin_int_Nup93/Nic96 243 378
IPR007231 Nucleoporin_int_Nup93/Nic96 457 909
No external refs found!