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  5. Cre17.g738300

Cre17.g738300


Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPP1 component


Gene families : OG_01_0000788 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000788_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cre17.g738300
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AT1G01100 No alias 60S acidic ribosomal protein family 0.26 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G00810 No alias 60S acidic ribosomal protein family 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G47700 No alias 60S acidic ribosomal protein family 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp3g02890.1 No alias component RPP1 of LSU proteome component 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g11950.1 No alias component RPP1 of LSU proteome component 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_21510V3.1 No alias 60S acidic ribosomal protein family 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c17_22190V3.1 No alias 60S acidic ribosomal protein family 0.32 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_36220V3.1 No alias 60S acidic ribosomal protein family 0.35 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c20_2800V3.1 No alias 60S acidic ribosomal protein family 0.21 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c23_18100V3.1 No alias 60S acidic ribosomal protein family 0.36 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c8_22380V3.1 No alias 60S acidic ribosomal protein family 0.38 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_06365.1 No alias component RPP1 of LSU proteome component 0.26 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005622 intracellular anatomical structure IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
CC GO:0005750 mitochondrial respiratory chain complex III IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009060 aerobic respiration IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019646 aerobic electron transport chain IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
MF GO:0033218 amide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
CC GO:0045275 respiratory chain complex III IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0120227 acyl-CoA binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
MF GO:1901567 fatty acid derivative binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
MF GO:1901681 sulfur compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!