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AT1G54170


Description : CTC-interacting domain 3


Gene families : OG_01_0003422 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003422_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G54170
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
Cre01.g063997 No alias Polyadenylate-binding protein-interacting protein 3... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000793 condensed chromosome IEP HCCA
CC GO:0000794 condensed nuclear chromosome IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004843 thiol-dependent deubiquitinase IEP HCCA
MF GO:0005249 voltage-gated potassium channel activity IEP HCCA
MF GO:0005267 potassium channel activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-dependent DNA replication IEP HCCA
BP GO:0006266 DNA ligation IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
CC GO:0008076 voltage-gated potassium channel complex IEP HCCA
MF GO:0008242 omega peptidase activity IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009875 pollen-pistil interaction IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0010183 pollen tube guidance IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
CC GO:0016514 SWI/SNF complex IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0022843 voltage-gated cation channel activity IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032877 positive regulation of DNA endoreduplication IEP HCCA
CC GO:0034702 ion channel complex IEP HCCA
CC GO:0034703 cation channel complex IEP HCCA
CC GO:0034705 potassium channel complex IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042330 taxis IEP HCCA
MF GO:0043138 3'-5' DNA helicase activity IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045740 positive regulation of DNA replication IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0045893 positive regulation of transcription, DNA-templated IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050918 positive chemotaxis IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
BP GO:0090068 positive regulation of cell cycle process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:2000105 positive regulation of DNA-dependent DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR009604 LsmAD_domain 205 273
IPR025852 SM_dom_ATX 52 129
IPR009818 Ataxin-2_C 464 475
PLAZA 3.0 Dicots AT1G54170