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  5. Mp1g02350.1

Mp1g02350.1


Description : RNA helicase (Sub2). helicase component UAP56 of TREX/THO mRNP trafficking complex


Gene families : OG_01_0003879 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003879_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g02350.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AT5G11170 No alias DEAD/DEAH box RNA helicase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre17.g719000 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c7_5890V3.1 No alias DEAD/DEAH box RNA helicase family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0004843 thiol-dependent deubiquitinase IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008242 omega peptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 278 385
IPR011545 DEAD/DEAH_box_helicase_dom 73 238
No external refs found!