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  5. Mp1g04040.1

Mp1g04040.1


Description : RNA chaperone (CSP). mRNA chaperone (CSD)


Gene families : OG_01_0001702 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001702_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g04040.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Pp3c5_6070V3.1 No alias glycine-rich protein 2B 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_7880V3.1 No alias No annotation 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_7920V3.1 No alias cold shock domain protein 1 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_23240V3.1 No alias cold shock domain protein 1 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004129 cytochrome-c oxidase activity IEP HCCA
MF GO:0004779 sulfate adenylyltransferase activity IEP HCCA
MF GO:0004781 sulfate adenylyltransferase (ATP) activity IEP HCCA
CC GO:0005740 mitochondrial envelope IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016675 oxidoreductase activity, acting on a heme group of donors IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0022853 active ion transmembrane transporter activity IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 135 152
IPR001878 Znf_CCHC 170 185
IPR002059 CSP_DNA-bd 11 75
No external refs found!