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  5. AT1G55000

AT1G55000


Description : peptidoglycan-binding LysM domain-containing protein


Gene families : OG_01_0008415 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0008415_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55000
Cluster HCCA: Cluster_261


Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0016998 cell wall macromolecule catabolic process ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0000293 ferric-chelate reductase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004040 amidase activity IEP HCCA
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP HCCA
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP HCCA
MF GO:0004737 pyruvate decarboxylase activity IEP HCCA
MF GO:0004740 pyruvate dehydrogenase (acetyl-transferring) kinase activity IEP HCCA
MF GO:0005310 dicarboxylic acid transmembrane transporter activity IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006638 neutral lipid metabolic process IEP HCCA
BP GO:0006639 acylglycerol metabolic process IEP HCCA
BP GO:0006641 triglyceride metabolic process IEP HCCA
BP GO:0006651 diacylglycerol biosynthetic process IEP HCCA
BP GO:0006775 fat-soluble vitamin metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006816 calcium ion transport IEP HCCA
BP GO:0006833 water transport IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
BP GO:0006882 cellular zinc ion homeostasis IEP HCCA
BP GO:0007030 Golgi organization IEP HCCA
MF GO:0008195 phosphatidate phosphatase activity IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009536 plastid IEP HCCA
BP GO:0009750 response to fructose IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
MF GO:0009927 histidine phosphotransfer kinase activity IEP HCCA
BP GO:0010189 vitamin E biosynthetic process IEP HCCA
BP GO:0010222 stem vascular tissue pattern formation IEP HCCA
MF GO:0010276 phytol kinase activity IEP HCCA
MF GO:0010283 pinoresinol reductase activity IEP HCCA
BP GO:0010942 positive regulation of cell death IEP HCCA
MF GO:0015139 alpha-ketoglutarate transmembrane transporter activity IEP HCCA
MF GO:0015140 malate transmembrane transporter activity IEP HCCA
MF GO:0015203 polyamine transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0015301 anion:anion antiporter activity IEP HCCA
MF GO:0015367 oxoglutarate:malate antiporter activity IEP HCCA
MF GO:0015368 calcium:cation antiporter activity IEP HCCA
MF GO:0015369 calcium:proton antiporter activity IEP HCCA
MF GO:0015556 C4-dicarboxylate transmembrane transporter activity IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015846 polyamine transport IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
BP GO:0016143 S-glycoside metabolic process IEP HCCA
BP GO:0016144 S-glycoside biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016411 acylglycerol O-acyltransferase activity IEP HCCA
MF GO:0016657 oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor IEP HCCA
MF GO:0016722 oxidoreductase activity, acting on metal ions IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0019432 triglyceride biosynthetic process IEP HCCA
BP GO:0019757 glycosinolate metabolic process IEP HCCA
BP GO:0019758 glycosinolate biosynthetic process IEP HCCA
BP GO:0019760 glucosinolate metabolic process IEP HCCA
BP GO:0019761 glucosinolate biosynthetic process IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0030026 cellular manganese ion homeostasis IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031063 regulation of histone deacetylation IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0032268 regulation of cellular protein metabolic process IEP HCCA
BP GO:0032880 regulation of protein localization IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
BP GO:0034250 positive regulation of cellular amide metabolic process IEP HCCA
BP GO:0042044 fluid transport IEP HCCA
BP GO:0042360 vitamin E metabolic process IEP HCCA
BP GO:0042362 fat-soluble vitamin biosynthetic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043068 positive regulation of programmed cell death IEP HCCA
MF GO:0043864 indoleacetamide hydrolase activity IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
MF GO:0045309 protein phosphorylated amino acid binding IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0045962 positive regulation of development, heterochronic IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046339 diacylglycerol metabolic process IEP HCCA
BP GO:0046460 neutral lipid biosynthetic process IEP HCCA
BP GO:0046463 acylglycerol biosynthetic process IEP HCCA
MF GO:0051219 phosphoprotein binding IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051865 protein autoubiquitination IEP HCCA
BP GO:0055062 phosphate ion homeostasis IEP HCCA
BP GO:0055071 manganese ion homeostasis IEP HCCA
BP GO:0055081 anion homeostasis IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0072506 trivalent inorganic anion homeostasis IEP HCCA
BP GO:0080005 photosystem stoichiometry adjustment IEP HCCA
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080037 negative regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0090311 regulation of protein deacetylation IEP HCCA
MF GO:0140323 solute:anion antiporter activity IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901659 glycosyl compound biosynthetic process IEP HCCA
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018392 LysM_dom 78 119
IPR001810 F-box_dom 9 37
PLAZA 3.0 Dicots AT1G55000