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  5. AT1G56310

AT1G56310


Description : Polynucleotidyl transferase, ribonuclease H-like superfamily protein


Gene families : OG_01_0002073 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G56310
Cluster HCCA: Cluster_91

Target Alias Description ECC score Gene Family Method Actions
Mp4g16470.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISS Interproscan
CC GO:0005622 intracellular anatomical structure ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008408 3'-5' exonuclease activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000785 chromatin IEP HCCA
CC GO:0000791 euchromatin IEP HCCA
CC GO:0000795 synaptonemal complex IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003747 translation release factor activity IEP HCCA
CC GO:0005712 chiasma IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006415 translational termination IEP HCCA
BP GO:0006730 one-carbon metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007131 reciprocal meiotic recombination IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008079 translation termination factor activity IEP HCCA
MF GO:0008841 dihydrofolate synthase activity IEP HCCA
BP GO:0009314 response to radiation IEP HCCA
BP GO:0009416 response to light stimulus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009639 response to red or far red light IEP HCCA
BP GO:0009648 photoperiodism IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0010154 fruit development IEP HCCA
BP GO:0010162 seed dormancy process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016246 RNA interference IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0022411 cellular component disassembly IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0022611 dormancy process IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
CC GO:0032389 MutLalpha complex IEP HCCA
CC GO:0032390 MutLbeta complex IEP HCCA
BP GO:0032984 protein-containing complex disassembly IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
BP GO:0035825 homologous recombination IEP HCCA
BP GO:0040030 regulation of molecular function, epigenetic IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
MF GO:0042393 histone binding IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043624 cellular protein complex disassembly IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045857 negative regulation of molecular function, epigenetic IEP HCCA
BP GO:0048316 seed development IEP HCCA
BP GO:0048366 leaf development IEP HCCA
BP GO:0048573 photoperiodism, flowering IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048825 cotyledon development IEP HCCA
BP GO:0048827 phyllome development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
BP GO:0140527 reciprocal homologous recombination IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
CC GO:1990391 DNA repair complex IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR002562 3'-5'_exonuclease_dom 360 531
PLAZA 3.0 Dicots AT1G56310