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  5. AT1G56570

AT1G56570


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0000019 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000019_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G56570
Cluster HCCA: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
AT1G77010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G32430 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_15090V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0009651 response to salt stress IMP Interproscan
BP GO:0009737 response to abscisic acid IMP Interproscan
BP GO:0009749 response to glucose IMP Interproscan
BP GO:0050832 defense response to fungus IMP Interproscan
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Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0003006 developmental process involved in reproduction IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006379 mRNA cleavage IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0007276 gamete generation IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
BP GO:0009790 embryo development IEP HCCA
BP GO:0009793 embryo development ending in seed dormancy IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0010252 auxin homeostasis IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0031897 Tic complex IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032875 regulation of DNA endoreduplication IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034214 protein hexamerization IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0045037 protein import into chloroplast stroma IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0090057 root radial pattern formation IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
BP GO:0090329 regulation of DNA-dependent DNA replication IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 75 121
IPR002885 Pentatricopeptide_repeat 417 443
IPR002885 Pentatricopeptide_repeat 179 205
IPR002885 Pentatricopeptide_repeat 251 278
IPR002885 Pentatricopeptide_repeat 352 377
IPR002885 Pentatricopeptide_repeat 381 411
IPR002885 Pentatricopeptide_repeat 446 477
PLAZA 3.0 Dicots AT1G56570