AT1G56690

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0011776 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G56690
Cluster	HCCA: Cluster_252

Target	Alias	Description	ECC score	Gene Family Method	Actions
AT1G09410	No alias	pentatricopeptide (PPR) repeat-containing protein	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000374	Group III intron splicing	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	HCCA
BP	GO:0006278	RNA-dependent DNA biosynthetic process	IEP	HCCA
BP	GO:0009956	radial pattern formation	IEP	HCCA
BP	GO:0010380	regulation of chlorophyll biosynthetic process	IEP	HCCA
BP	GO:0010496	intercellular transport	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0048564	photosystem I assembly	IEP	HCCA
BP	GO:0051026	chiasma assembly	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
BP	GO:0090056	regulation of chlorophyll metabolic process	IEP	HCCA
BP	GO:0090057	root radial pattern formation	IEP	HCCA
BP	GO:0090351	seedling development	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1901401	regulation of tetrapyrrole metabolic process	IEP	HCCA
BP	GO:1901463	regulation of tetrapyrrole biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032867	DYW_dom	569	693
IPR002885	Pentatricopeptide_repeat	395	442
IPR002885	Pentatricopeptide_repeat	235	262
IPR002885	Pentatricopeptide_repeat	111	140
IPR002885	Pentatricopeptide_repeat	142	170
IPR002885	Pentatricopeptide_repeat	267	294
IPR002885	Pentatricopeptide_repeat	471	494
IPR002885	Pentatricopeptide_repeat	298	327
IPR002885	Pentatricopeptide_repeat	50	79
IPR002885	Pentatricopeptide_repeat	80	110
IPR002885	Pentatricopeptide_repeat	204	232
IPR002885	Pentatricopeptide_repeat	176	203

External Links

PLAZA 3.0 Dicots	AT1G56690