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  5. AT1G57565

AT1G57565


Description : SWI-SNF-related chromatin binding protein


Gene families : OG_01_0001079 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001079_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G57565
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
AT1G20690 No alias SWI-SNF-related chromatin binding protein 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G20795 No alias F-box family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G20800 No alias F-box family protein 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
CC GO:0000311 plastid large ribosomal subunit IEP HCCA
MF GO:0003883 CTP synthase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009736 cytokinin-activated signaling pathway IEP HCCA
BP GO:0010315 auxin efflux IEP HCCA
BP GO:0010541 acropetal auxin transport IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
CC GO:1990234 transferase complex IEP HCCA

No InterPro domains available for this sequence

PLAZA 3.0 Dicots AT1G57565