Mp1g26320.1

Description : dual-specificity tRNA/rRNA pseudouridine synthase (RluA)

Gene families : OG_01_0006828 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006828_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp1g26320.1
Cluster	HCCA: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zci_11013.1	No alias	dual-specificity tRNA/rRNA pseudouridine synthase (RluA)	0.01	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0000105	histidine biosynthetic process	IEP	HCCA
BP	GO:0002097	tRNA wobble base modification	IEP	HCCA
BP	GO:0002098	tRNA wobble uridine modification	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
CC	GO:0005777	peroxisome	IEP	HCCA
BP	GO:0006188	IMP biosynthetic process	IEP	HCCA
BP	GO:0006189	'de novo' IMP biosynthetic process	IEP	HCCA
BP	GO:0006400	tRNA modification	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006547	histidine metabolic process	IEP	HCCA
BP	GO:0006629	lipid metabolic process	IEP	HCCA
BP	GO:0006643	membrane lipid metabolic process	IEP	HCCA
BP	GO:0006664	glycolipid metabolic process	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0007031	peroxisome organization	IEP	HCCA
MF	GO:0008759	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	HCCA
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	HCCA
BP	GO:0009235	cobalamin metabolic process	IEP	HCCA
BP	GO:0009236	cobalamin biosynthetic process	IEP	HCCA
BP	GO:0009245	lipid A biosynthetic process	IEP	HCCA
BP	GO:0009247	glycolipid biosynthetic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
MF	GO:0015095	magnesium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0015693	magnesium ion transport	IEP	HCCA
MF	GO:0016409	palmitoyltransferase activity	IEP	HCCA
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0019213	deacetylase activity	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0034227	tRNA thio-modification	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
CC	GO:0042579	microbody	IEP	HCCA
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046040	IMP metabolic process	IEP	HCCA
BP	GO:0046467	membrane lipid biosynthetic process	IEP	HCCA
BP	GO:0046493	lipid A metabolic process	IEP	HCCA
CC	GO:0070531	BRCA1-A complex	IEP	HCCA
CC	GO:0070552	BRISC complex	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901269	lipooligosaccharide metabolic process	IEP	HCCA
BP	GO:1901271	lipooligosaccharide biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1903509	liposaccharide metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	106	295

External Links

No external refs found!

Mp1g26320.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation