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  5. Mp1g28890.1

Mp1g28890.1


Description : alpha-class expansin


Gene families : OG_01_0000011 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000011_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp1g28890.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT5G39300 No alias expansin A25 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_8440V3.1 No alias expansin A9 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_1940V3.1 No alias expansin A9 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c24_15400V3.1 No alias expansin A15 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 143 229
IPR007117 Expansin_CBD 241 319
No external refs found!