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  5. AT1G58470

AT1G58470


Description : RNA-binding protein 1


Gene families : OG_01_0016702 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G58470
Cluster HCCA: Cluster_263


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
MF GO:0003727 single-stranded RNA binding IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0008283 cell population proliferation TAS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000103 sulfate assimilation IEP HCCA
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
CC GO:0000793 condensed chromosome IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0002252 immune effector process IEP HCCA
BP GO:0002376 immune system process IEP HCCA
BP GO:0002679 respiratory burst involved in defense response IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004364 glutathione transferase activity IEP HCCA
MF GO:0004396 hexokinase activity IEP HCCA
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
MF GO:0004623 phospholipase A2 activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0004709 MAP kinase kinase kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005615 extracellular space IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006282 regulation of DNA repair IEP HCCA
BP GO:0006808 regulation of nitrogen utilization IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008083 growth factor activity IEP HCCA
BP GO:0008156 negative regulation of DNA replication IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009061 anaerobic respiration IEP HCCA
BP GO:0009404 toxin metabolic process IEP HCCA
BP GO:0009407 toxin catabolic process IEP HCCA
BP GO:0009605 response to external stimulus IEP HCCA
BP GO:0009611 response to wounding IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0009692 ethylene metabolic process IEP HCCA
BP GO:0009693 ethylene biosynthetic process IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0009751 response to salicylic acid IEP HCCA
BP GO:0009755 hormone-mediated signaling pathway IEP HCCA
BP GO:0009820 alkaloid metabolic process IEP HCCA
BP GO:0009821 alkaloid biosynthetic process IEP HCCA
BP GO:0009873 ethylene-activated signaling pathway IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
BP GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid IEP HCCA
BP GO:0009969 xyloglucan biosynthetic process IEP HCCA
MF GO:0009973 adenylyl-sulfate reductase activity IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010080 regulation of floral meristem growth IEP HCCA
BP GO:0010200 response to chitin IEP HCCA
BP GO:0010223 secondary shoot formation IEP HCCA
BP GO:0010243 response to organonitrogen compound IEP HCCA
BP GO:0010286 heat acclimation IEP HCCA
BP GO:0010288 response to lead ion IEP HCCA
BP GO:0010346 shoot axis formation IEP HCCA
BP GO:0010449 root meristem growth IEP HCCA
BP GO:0010492 maintenance of shoot apical meristem identity IEP HCCA
BP GO:0010583 response to cyclopentenone IEP HCCA
BP GO:0014070 response to organic cyclic compound IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016629 12-oxophytodienoate reductase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
MF GO:0019789 SUMO transferase activity IEP HCCA
BP GO:0022622 root system development IEP HCCA
MF GO:0022821 potassium ion antiporter activity IEP HCCA
BP GO:0030029 actin filament-based process IEP HCCA
BP GO:0030048 actin filament-based movement IEP HCCA
MF GO:0030545 signaling receptor regulator activity IEP HCCA
MF GO:0030546 signaling receptor activator activity IEP HCCA
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP HCCA
CC GO:0031307 integral component of mitochondrial outer membrane IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
CC GO:0032592 integral component of mitochondrial membrane IEP HCCA
BP GO:0032876 negative regulation of DNA endoreduplication IEP HCCA
BP GO:0033037 polysaccharide localization IEP HCCA
MF GO:0033843 xyloglucan 6-xylosyltransferase activity IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
MF GO:0035252 UDP-xylosyltransferase activity IEP HCCA
BP GO:0035265 organ growth IEP HCCA
BP GO:0035266 meristem growth IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042171 lysophosphatidic acid acyltransferase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
MF GO:0042285 xylosyltransferase activity IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0043200 response to amino acid IEP HCCA
BP GO:0043449 cellular alkene metabolic process IEP HCCA
BP GO:0043450 alkene biosynthetic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0045730 respiratory burst IEP HCCA
BP GO:0045739 positive regulation of DNA repair IEP HCCA
BP GO:0045931 positive regulation of mitotic cell cycle IEP HCCA
BP GO:0046620 regulation of organ growth IEP HCCA
BP GO:0046621 negative regulation of organ growth IEP HCCA
MF GO:0048018 receptor ligand activity IEP HCCA
BP GO:0048317 seed morphogenesis IEP HCCA
BP GO:0048364 root development IEP HCCA
BP GO:0048482 plant ovule morphogenesis IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048584 positive regulation of response to stimulus IEP HCCA
BP GO:0048640 negative regulation of developmental growth IEP HCCA
BP GO:0048731 system development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051054 positive regulation of DNA metabolic process IEP HCCA
BP GO:0051176 positive regulation of sulfur metabolic process IEP HCCA
BP GO:0051645 Golgi localization IEP HCCA
BP GO:0051646 mitochondrion localization IEP HCCA
BP GO:0051865 protein autoubiquitination IEP HCCA
BP GO:0052542 defense response by callose deposition IEP HCCA
BP GO:0052545 callose localization IEP HCCA
BP GO:0055088 lipid homeostasis IEP HCCA
BP GO:0055089 fatty acid homeostasis IEP HCCA
BP GO:0055090 acylglycerol homeostasis IEP HCCA
BP GO:0055091 phospholipid homeostasis IEP HCCA
BP GO:0060151 peroxisome localization IEP HCCA
BP GO:0060249 anatomical structure homeostasis IEP HCCA
BP GO:0060250 germ-line stem-cell niche homeostasis IEP HCCA
BP GO:0060771 phyllotactic patterning IEP HCCA
BP GO:0060772 leaf phyllotactic patterning IEP HCCA
BP GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070328 triglyceride homeostasis IEP HCCA
MF GO:0071617 lysophospholipid acyltransferase activity IEP HCCA
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080038 positive regulation of cytokinin-activated signaling pathway IEP HCCA
BP GO:0080050 regulation of seed development IEP HCCA
BP GO:0090333 regulation of stomatal closure IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
CC GO:0098573 intrinsic component of mitochondrial membrane IEP HCCA
BP GO:0098754 detoxification IEP HCCA
BP GO:0120251 hydrocarbon biosynthetic process IEP HCCA
BP GO:0120252 hydrocarbon metabolic process IEP HCCA
BP GO:0120254 olefinic compound metabolic process IEP HCCA
BP GO:0120255 olefinic compound biosynthetic process IEP HCCA
BP GO:1900673 olefin metabolic process IEP HCCA
BP GO:1900674 olefin biosynthetic process IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1902065 response to L-glutamate IEP HCCA
BP GO:2000034 regulation of seed maturation IEP HCCA
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP HCCA
BP GO:2000693 positive regulation of seed maturation IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
BP GO:2001022 positive regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 68
IPR000504 RRM_dom 122 188
PLAZA 3.0 Dicots AT1G58470