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  5. AT1G62440

AT1G62440


Description : leucine-rich repeat/extensin 2


Gene families : OG_01_0000787 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000787_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G62440
Cluster HCCA: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
AT4G28380 No alias Leucine-rich repeat (LRR) family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g04500.1 No alias Leucine-rich repeat extensin-like protein 1... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
BP GO:0000904 cell morphogenesis involved in differentiation IGI Interproscan
MF GO:0005199 structural constituent of cell wall ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0009505 plant-type cell wall IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000217 DNA secondary structure binding IEP HCCA
CC GO:0000325 plant-type vacuole IEP HCCA
MF GO:0002020 protease binding IEP HCCA
MF GO:0003680 minor groove of adenine-thymine-rich DNA binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004860 protein kinase inhibitor activity IEP HCCA
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP HCCA
MF GO:0005372 water transmembrane transporter activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005773 vacuole IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006811 ion transport IEP HCCA
BP GO:0006820 anion transport IEP HCCA
BP GO:0006825 copper ion transport IEP HCCA
BP GO:0006833 water transport IEP HCCA
BP GO:0007088 regulation of mitotic nuclear division IEP HCCA
BP GO:0008154 actin polymerization or depolymerization IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0008430 selenium binding IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009650 UV protection IEP HCCA
CC GO:0009705 plant-type vacuole membrane IEP HCCA
BP GO:0010026 trichome differentiation IEP HCCA
BP GO:0010053 root epidermal cell differentiation IEP HCCA
BP GO:0010167 response to nitrate IEP HCCA
BP GO:0010383 cell wall polysaccharide metabolic process IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
BP GO:0010639 negative regulation of organelle organization IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0015250 water channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
CC GO:0015629 actin cytoskeleton IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015706 nitrate transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016049 cell growth IEP HCCA
BP GO:0016125 sterol metabolic process IEP HCCA
BP GO:0016126 sterol biosynthetic process IEP HCCA
BP GO:0016128 phytosteroid metabolic process IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
BP GO:0016131 brassinosteroid metabolic process IEP HCCA
BP GO:0016132 brassinosteroid biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0019210 kinase inhibitor activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
CC GO:0030054 cell junction IEP HCCA
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP HCCA
CC GO:0031224 intrinsic component of membrane IEP HCCA
CC GO:0031225 anchored component of membrane IEP HCCA
CC GO:0031226 intrinsic component of plasma membrane IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034406 cell wall beta-glucan metabolic process IEP HCCA
BP GO:0040007 growth IEP HCCA
BP GO:0042044 fluid transport IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
BP GO:0042446 hormone biosynthetic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
CC GO:0042807 central vacuole IEP HCCA
BP GO:0044036 cell wall macromolecule metabolic process IEP HCCA
BP GO:0045839 negative regulation of mitotic nuclear division IEP HCCA
BP GO:0045930 negative regulation of mitotic cell cycle IEP HCCA
CC GO:0046658 anchored component of plasma membrane IEP HCCA
BP GO:0048588 developmental cell growth IEP HCCA
BP GO:0048589 developmental growth IEP HCCA
BP GO:0048767 root hair elongation IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051783 regulation of nuclear division IEP HCCA
BP GO:0051784 negative regulation of nuclear division IEP HCCA
BP GO:0052541 plant-type cell wall cellulose metabolic process IEP HCCA
BP GO:0060560 developmental growth involved in morphogenesis IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0080170 hydrogen peroxide transmembrane transport IEP HCCA
BP GO:0120178 steroid hormone biosynthetic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 169 224
IPR013210 LRR_N_plant-typ 99 131
PLAZA 3.0 Dicots AT1G62440