AT1G63020

Description : nuclear RNA polymerase D1A

Gene families : OG_01_0002189 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002189_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G63020
Cluster	HCCA: Cluster_40

Type	GO Term	Name	Evidence	Source
CC	GO:0000418	RNA polymerase IV complex	IPI	Interproscan
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
BP	GO:0002376	immune system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005654	nucleoplasm	IDA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	RCA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	IMP	Interproscan
BP	GO:0006346	DNA methylation-dependent heterochromatin assembly	RCA	Interproscan
BP	GO:0006351	transcription, DNA-templated	ISS	Interproscan
BP	GO:0006354	DNA-templated transcription, elongation	RCA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007154	cell communication	None	Extended
BP	GO:0007267	cell-cell signaling	IMP	Interproscan
BP	GO:0007267	cell-cell signaling	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	RNAi-mediated antiviral immune response	RCA	Interproscan
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010495	long-distance posttranscriptional gene silencing	IMP	Interproscan
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	posttranscriptional regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016246	RNA interference	IMP	Interproscan
BP	GO:0016246	RNA interference	RCA	Interproscan
BP	GO:0016441	posttranscriptional gene silencing	None	Extended
BP	GO:0016569	obsolete covalent chromatin modification	RCA	Interproscan
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018022	peptidyl-lysine methylation	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0018193	peptidyl-amino acid modification	None	Extended
BP	GO:0018205	peptidyl-lysine modification	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0023052	signaling	None	Extended
BP	GO:0030422	production of siRNA involved in RNA interference	IMP	Interproscan
BP	GO:0030422	production of siRNA involved in RNA interference	IGI	Interproscan
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0031047	gene silencing by RNA	IMP	Interproscan
BP	GO:0031047	gene silencing by RNA	RCA	Interproscan
BP	GO:0031048	heterochromatin assembly by small RNA	RCA	Interproscan
BP	GO:0031050	dsRNA processing	None	Extended
BP	GO:0031507	heterochromatin assembly	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034968	histone lysine methylation	None	Extended
BP	GO:0035194	post-transcriptional gene silencing by RNA	None	Extended
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	RCA	Interproscan
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0040029	regulation of gene expression, epigenetic	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0044728	DNA methylation or demethylation	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0045814	negative regulation of gene expression, epigenetic	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051567	histone H3-K9 methylation	RCA	Interproscan
BP	GO:0051607	defense response to virus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061647	histone H3-K9 modification	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070828	heterochromatin organization	None	Extended
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	HCCA
BP	GO:0000281	mitotic cytokinesis	IEP	HCCA
BP	GO:0000723	telomere maintenance	IEP	HCCA
BP	GO:0000959	mitochondrial RNA metabolic process	IEP	HCCA
MF	GO:0003720	telomerase activity	IEP	HCCA
MF	GO:0003721	telomerase RNA reverse transcriptase activity	IEP	HCCA
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	HCCA
MF	GO:0003964	RNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004609	phosphatidylserine decarboxylase activity	IEP	HCCA
BP	GO:0006089	lactate metabolic process	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006278	RNA-dependent DNA biosynthetic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006303	double-strand break repair via nonhomologous end joining	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0007004	telomere maintenance via telomerase	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
MF	GO:0009008	DNA-methyltransferase activity	IEP	HCCA
BP	GO:0009438	methylglyoxal metabolic process	IEP	HCCA
BP	GO:0010069	zygote asymmetric cytokinesis in embryo sac	IEP	HCCA
BP	GO:0010070	zygote asymmetric cell division	IEP	HCCA
BP	GO:0010425	DNA methylation on cytosine within a CNG sequence	IEP	HCCA
BP	GO:0010833	telomere maintenance via telomere lengthening	IEP	HCCA
BP	GO:0015074	DNA integration	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0016572	histone phosphorylation	IEP	HCCA
BP	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	IEP	HCCA
BP	GO:0031056	regulation of histone modification	IEP	HCCA
BP	GO:0031060	regulation of histone methylation	IEP	HCCA
BP	GO:0031221	arabinan metabolic process	IEP	HCCA
BP	GO:0032200	telomere organization	IEP	HCCA
BP	GO:0032776	DNA methylation on cytosine	IEP	HCCA
BP	GO:0035884	arabinan biosynthetic process	IEP	HCCA
BP	GO:0042182	ketone catabolic process	IEP	HCCA
BP	GO:0046185	aldehyde catabolic process	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0050000	chromosome localization	IEP	HCCA
BP	GO:0051026	chiasma assembly	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051570	regulation of histone H3-K9 methylation	IEP	HCCA
BP	GO:0051596	methylglyoxal catabolic process	IEP	HCCA
BP	GO:0061640	cytoskeleton-dependent cytokinesis	IEP	HCCA
BP	GO:0061727	methylglyoxal catabolic process to lactate	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0071897	DNA biosynthetic process	IEP	HCCA
BP	GO:0080156	mitochondrial mRNA modification	IEP	HCCA
MF	GO:0120227	acyl-CoA binding	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
BP	GO:1900109	regulation of histone H3-K9 dimethylation	IEP	HCCA
BP	GO:1900864	mitochondrial RNA modification	IEP	HCCA
MF	GO:1901567	fatty acid derivative binding	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000722	RNA_pol_asu	315	471
IPR007083	RNA_pol_Rpb1_4	662	796
IPR007066	RNA_pol_Rpb1_3	476	627
IPR007080	RNA_pol_Rpb1_1	39	105

External Links

PLAZA 3.0 Dicots	AT1G63020

AT1G63020

Expression Profile

Co-expression Networks

Functional Annotation