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AT1G63170


Description : Zinc finger, C3HC4 type (RING finger) family protein


Gene families : OG_01_0000398 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000398_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G63170
Cluster HCCA: Cluster_258

Target Alias Description ECC score Gene Family Method Actions
Pp3c26_7240V3.1 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_10570V3.1 No alias RING/U-box superfamily protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s52_10V3.1 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s52_140V3.1 No alias No annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12496.1 No alias ubiquitin protein ligase (RIE1) 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000164 protein phosphatase type 1 complex IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
CC GO:0000815 ESCRT III complex IEP HCCA
CC GO:0005874 microtubule IEP HCCA
CC GO:0005881 cytoplasmic microtubule IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008565 obsolete protein transporter activity IEP HCCA
MF GO:0009044 xylan 1,4-beta-xylosidase activity IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009832 plant-type cell wall biogenesis IEP HCCA
CC GO:0010005 cortical microtubule, transverse to long axis IEP HCCA
BP GO:0010411 xyloglucan metabolic process IEP HCCA
BP GO:0010431 seed maturation IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0010923 negative regulation of phosphatase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0032269 negative regulation of cellular protein metabolic process IEP HCCA
BP GO:0032515 negative regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0035305 negative regulation of dephosphorylation IEP HCCA
BP GO:0035308 negative regulation of protein dephosphorylation IEP HCCA
CC GO:0036452 ESCRT complex IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044347 cell wall polysaccharide catabolic process IEP HCCA
BP GO:0045493 xylan catabolic process IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051346 negative regulation of hydrolase activity IEP HCCA
CC GO:0055028 cortical microtubule IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0071669 plant-type cell wall organization or biogenesis IEP HCCA
MF GO:0080176 xyloglucan 1,6-alpha-xylosidase activity IEP HCCA
MF GO:0097599 xylanase activity IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 324 366
PLAZA 3.0 Dicots AT1G63170