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AT1G63400


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000231 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G63400
Cluster HCCA: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
AT1G62670 No alias rna processing factor 2 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint signaling IEP HCCA
BP GO:0000076 DNA replication checkpoint signaling IEP HCCA
BP GO:0000374 Group III intron splicing IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004016 adenylate cyclase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0009845 seed germination IEP HCCA
BP GO:0009956 radial pattern formation IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
BP GO:0010496 intercellular transport IEP HCCA
BP GO:0010948 negative regulation of cell cycle process IEP HCCA
MF GO:0016755 aminoacyltransferase activity IEP HCCA
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
BP GO:0031570 DNA integrity checkpoint signaling IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0046937 phytochelatin metabolic process IEP HCCA
BP GO:0046938 phytochelatin biosynthetic process IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090057 root radial pattern formation IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:1901988 negative regulation of cell cycle phase transition IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 188 237
IPR002885 Pentatricopeptide_repeat 398 445
IPR002885 Pentatricopeptide_repeat 328 376
IPR002885 Pentatricopeptide_repeat 119 167
IPR002885 Pentatricopeptide_repeat 468 517
IPR002885 Pentatricopeptide_repeat 259 307
IPR002885 Pentatricopeptide_repeat 534 567
PLAZA 3.0 Dicots AT1G63400