1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G65110

AT1G65110


Description : Ubiquitin carboxyl-terminal hydrolase-related protein


Gene families : OG_01_0000436 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000436_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G65110
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AT1G52450 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65130 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65140 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65170 No alias Ubiquitin carboxyl-terminal hydrolase family protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G65200 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G27630 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34230 No alias Protein with domains of unknown function (DUF627 and DUF629) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G02660 No alias Protein with domains of unknown function (DUF627 and DUF629) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G61950 No alias Ubiquitin carboxyl-terminal hydrolase-related protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000374 Group III intron splicing IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003964 RNA-directed DNA polymerase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP HCCA
BP GO:0030198 extracellular matrix organization IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0043062 extracellular structure organization IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090351 seedling development IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 781 1069
IPR006866 DUF627_N 9 115
IPR006865 DUF629 148 613
PLAZA 3.0 Dicots AT1G65110