Mp4g13200.1

Description : DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis thaliana (sp|q7fgz2|rh1_arath : 134.0)

Gene families : OG_01_0002282 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002282_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp4g13200.1
Cluster	HCCA: Cluster_152

Target	Alias	Description	ECC score	Gene Family Method
Mp4g13160.1	No alias	DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g13210.1	No alias	DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis...	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp8g04910.1	No alias	DEAD-box ATP-dependent RNA helicase 1 OS=Arabidopsis...	0.06	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
MpVg00900.1	No alias	No annotation	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004560	alpha-L-fucosidase activity	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
MF	GO:0015928	fucosidase activity	IEP	HCCA
BP	GO:0019321	pentose metabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0019566	arabinose metabolic process	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
MF	GO:0043531	ADP binding	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044267	cellular protein metabolic process	IEP	HCCA
BP	GO:0046373	L-arabinose metabolic process	IEP	HCCA
MF	GO:0046556	alpha-L-arabinofuranosidase activity	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	133	182
IPR011545	DEAD/DEAH_box_helicase_dom	12	107

External Links

No external refs found!