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  5. Mp4g18960.1

Mp4g18960.1


Description : DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana (sp|q9lu46|rh35_arath : 914.0)


Gene families : OG_01_0002020 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp4g18960.1
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Cre07.g334200 No alias DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_520V3.1 No alias DEAD-box protein abstrakt, putative 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_09453.2 No alias no annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_09453.3 No alias no annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004484 mRNA guanylyltransferase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006370 7-methylguanosine mRNA capping IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006623 protein targeting to vacuole IEP HCCA
BP GO:0006914 autophagy IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
MF GO:0008192 RNA guanylyltransferase activity IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0061919 process utilizing autophagic mechanism IEP HCCA
MF GO:0070568 guanylyltransferase activity IEP HCCA
BP GO:0072665 protein localization to vacuole IEP HCCA
BP GO:0072666 establishment of protein localization to vacuole IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 385 492
IPR011545 DEAD/DEAH_box_helicase_dom 170 349
No external refs found!