AT1G06170

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG_01_0004922 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004922_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G06170
Cluster	HCCA: Cluster_5

Target	Alias	Description	ECC score	Gene Family Method	Actions
Pp3c5_20560V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.03	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_8660V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.04	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	HCCA
BP	GO:0000902	cell morphogenesis	IEP	HCCA
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0004089	carbonate dehydratase activity	IEP	HCCA
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IEP	HCCA
MF	GO:0004497	monooxygenase activity	IEP	HCCA
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005788	endoplasmic reticulum lumen	IEP	HCCA
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	HCCA
BP	GO:0006595	polyamine metabolic process	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
BP	GO:0006869	lipid transport	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0008216	spermidine metabolic process	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009554	megasporogenesis	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
BP	GO:0009556	microsporogenesis	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009820	alkaloid metabolic process	IEP	HCCA
BP	GO:0009821	alkaloid biosynthetic process	IEP	HCCA
BP	GO:0009826	unidimensional cell growth	IEP	HCCA
BP	GO:0009827	plant-type cell wall modification	IEP	HCCA
BP	GO:0009860	pollen tube growth	IEP	HCCA
BP	GO:0009932	cell tip growth	IEP	HCCA
BP	GO:0010208	pollen wall assembly	IEP	HCCA
BP	GO:0010584	pollen exine formation	IEP	HCCA
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	HCCA
MF	GO:0015645	fatty acid ligase activity	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016298	lipase activity	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEP	HCCA
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	HCCA
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	HCCA
MF	GO:0016843	amine-lyase activity	IEP	HCCA
MF	GO:0016844	strictosidine synthase activity	IEP	HCCA
BP	GO:0019499	cyanide metabolic process	IEP	HCCA
BP	GO:0019953	sexual reproduction	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0031956	medium-chain fatty acid-CoA ligase activity	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	HCCA
BP	GO:0034293	sexual sporulation	IEP	HCCA
BP	GO:0035337	fatty-acyl-CoA metabolic process	IEP	HCCA
BP	GO:0035384	thioester biosynthetic process	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043934	sporulation	IEP	HCCA
BP	GO:0044106	cellular amine metabolic process	IEP	HCCA
BP	GO:0044703	multi-organism reproductive process	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046202	cyanide biosynthetic process	IEP	HCCA
BP	GO:0046949	fatty-acyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048236	plant-type sporogenesis	IEP	HCCA
BP	GO:0048533	sporocyte differentiation	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0048654	anther morphogenesis	IEP	HCCA
BP	GO:0048658	anther wall tapetum development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
MF	GO:0050734	hydroxycinnamoyltransferase activity	IEP	HCCA
BP	GO:0051321	meiotic cell cycle	IEP	HCCA
BP	GO:0051704	multi-organism process	IEP	HCCA
BP	GO:0055046	microgametogenesis	IEP	HCCA
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
MF	GO:0072532	tri-(feruloyl or hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	HCCA
MF	GO:0072533	tri-(coumaroyl or caffeoyl) spermidine meta-hydroxylase activity	IEP	HCCA
MF	GO:0072547	tricoumaroylspermidine meta-hydroxylase activity	IEP	HCCA
MF	GO:0072548	dicoumaroyl monocaffeoyl spermidine meta-hydroxylase activity	IEP	HCCA
MF	GO:0072549	monocoumaroyl dicaffeoyl spermidine meta-hydroxylase activity	IEP	HCCA
MF	GO:0072550	triferuloylspermidine meta-hydroxylase activity	IEP	HCCA
MF	GO:0072551	diferuloyl mono-(hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	HCCA
MF	GO:0072552	monoferuloyl di-(hydroxyferuloyl) spermidine meta-hydroxylase activity	IEP	HCCA
MF	GO:0080072	spermidine:sinapoyl CoA N-acyltransferase activity	IEP	HCCA
MF	GO:0080073	spermidine:coumaroyl CoA N-acyltransferase activity	IEP	HCCA
MF	GO:0080074	spermidine:caffeoyl CoA N-acyltransferase activity	IEP	HCCA
MF	GO:0080075	spermidine:feruloyl CoA N-acyltransferase activity	IEP	HCCA
BP	GO:0080088	spermidine hydroxycinnamate conjugate biosynthetic process	IEP	HCCA
BP	GO:0080110	sporopollenin biosynthetic process	IEP	HCCA
BP	GO:1901568	fatty acid derivative metabolic process	IEP	HCCA
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	220	261

External Links

PLAZA 3.0 Dicots	AT1G06170

AT1G06170

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation