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  5. AT1G66660

AT1G66660


Description : Protein with RING/U-box and TRAF-like domains


Gene families : OG_01_0001230 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0001230_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G66660
Cluster HCCA: Cluster_76


Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISS Interproscan
BP GO:0007275 multicellular organism development ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
BP GO:0000354 cis assembly of pre-catalytic spliceosome IEP HCCA
CC GO:0000813 ESCRT I complex IEP HCCA
CC GO:0000932 P-body IEP HCCA
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0000987 cis-regulatory region sequence-specific DNA binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
BP GO:0001709 cell fate determination IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003997 acyl-CoA oxidase activity IEP HCCA
MF GO:0004042 acetyl-CoA:L-glutamate N-acetyltransferase activity IEP HCCA
MF GO:0004605 phosphatidate cytidylyltransferase activity IEP HCCA
MF GO:0004629 phospholipase C activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005354 galactose transmembrane transporter activity IEP HCCA
MF GO:0005539 glycosaminoglycan binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
CC GO:0005686 U2 snRNP IEP HCCA
BP GO:0006089 lactate metabolic process IEP HCCA
BP GO:0006446 regulation of translational initiation IEP HCCA
BP GO:0006513 protein monoubiquitination IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006625 protein targeting to peroxisome IEP HCCA
BP GO:0006635 fatty acid beta-oxidation IEP HCCA
BP GO:0006855 xenobiotic transmembrane transport IEP HCCA
BP GO:0009062 fatty acid catabolic process IEP HCCA
BP GO:0009396 folic acid-containing compound biosynthetic process IEP HCCA
BP GO:0009438 methylglyoxal metabolic process IEP HCCA
BP GO:0010262 somatic embryogenesis IEP HCCA
CC GO:0015030 Cajal body IEP HCCA
MF GO:0015145 monosaccharide transmembrane transporter activity IEP HCCA
MF GO:0015149 hexose transmembrane transporter activity IEP HCCA
BP GO:0015919 peroxisomal membrane transport IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016558 protein import into peroxisome matrix IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
BP GO:0016998 cell wall macromolecule catabolic process IEP HCCA
MF GO:0017022 myosin binding IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017151 DEAD/H-box RNA helicase binding IEP HCCA
BP GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione IEP HCCA
BP GO:0019395 fatty acid oxidation IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
BP GO:0030258 lipid modification IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0030742 GTP-dependent protein binding IEP HCCA
BP GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA IEP HCCA
BP GO:0031099 regeneration IEP HCCA
MF GO:0032029 myosin tail binding IEP HCCA
MF GO:0032036 myosin heavy chain binding IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0034440 lipid oxidation IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0035064 methylated histone binding IEP HCCA
CC GO:0035770 ribonucleoprotein granule IEP HCCA
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP HCCA
BP GO:0042182 ketone catabolic process IEP HCCA
BP GO:0042559 pteridine-containing compound biosynthetic process IEP HCCA
MF GO:0042834 peptidoglycan binding IEP HCCA
BP GO:0042908 xenobiotic transport IEP HCCA
BP GO:0043405 regulation of MAP kinase activity IEP HCCA
BP GO:0043407 negative regulation of MAP kinase activity IEP HCCA
BP GO:0043408 regulation of MAPK cascade IEP HCCA
BP GO:0043409 negative regulation of MAPK cascade IEP HCCA
BP GO:0043574 peroxisomal transport IEP HCCA
BP GO:0044242 cellular lipid catabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0044743 protein transmembrane import into intracellular organelle IEP HCCA
BP GO:0046185 aldehyde catabolic process IEP HCCA
BP GO:0048598 embryonic morphogenesis IEP HCCA
MF GO:0050072 m7G(5')pppN diphosphatase activity IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051596 methylglyoxal catabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0061727 methylglyoxal catabolic process to lactate IEP HCCA
MF GO:0070567 cytidylyltransferase activity IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0072329 monocarboxylic acid catabolic process IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072662 protein localization to peroxisome IEP HCCA
BP GO:0072663 establishment of protein localization to peroxisome IEP HCCA
MF GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEP HCCA
MF GO:0080115 myosin XI tail binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
BP GO:0110154 RNA decapping IEP HCCA
BP GO:0110156 methylguanosine-cap decapping IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140030 modification-dependent protein binding IEP HCCA
MF GO:0140034 methylation-dependent protein binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1900055 regulation of leaf senescence IEP HCCA
BP GO:1900056 negative regulation of leaf senescence IEP HCCA
MF GO:1901981 phosphatidylinositol phosphate binding IEP HCCA
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR018121 7-in-absentia-prot_TRAF-dom 24 100
PLAZA 3.0 Dicots AT1G66660