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  5. Mp5g12540.1

Mp5g12540.1


Description : Pathogenesis-related protein 1C OS=Nicotiana tabacum (sp|p09042|pr1c_tobac : 136.0)


Gene families : OG_01_0000025 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp5g12540.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AT3G09590 No alias CAP (Cysteine-rich secretory proteins, Antigen 5, and... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G19690 No alias CAP (Cysteine-rich secretory proteins, Antigen 5, and... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G02730 No alias CAP (Cysteine-rich secretory proteins, Antigen 5, and... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g05480.1 No alias Basic form of pathogenesis-related protein 1... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp6g06330.1 No alias Pathogenesis-related protein 1C OS=Nicotiana tabacum... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mpzg00770.1 No alias Pathogenesis-related protein 1C OS=Nicotiana tabacum... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_120V3.1 No alias CAP (Cysteine-rich secretory proteins, Antigen 5, and... 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_11873.1 No alias no annotation 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12754.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR014044 CAP_domain 32 151
No external refs found!