Mp5g20110.1

Description : dual-specificity tRNA/rRNA pseudouridine synthase (RluA)

Gene families : OG_01_0005442 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005442_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp5g20110.1
Cluster	HCCA: Cluster_71

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	IEP	HCCA
BP	GO:0000077	DNA damage checkpoint signaling	IEP	HCCA
CC	GO:0000139	Golgi membrane	IEP	HCCA
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006352	DNA-templated transcription, initiation	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0006897	endocytosis	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0010948	negative regulation of cell cycle process	IEP	HCCA
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	HCCA
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0017025	TBP-class protein binding	IEP	HCCA
CC	GO:0030677	ribonuclease P complex	IEP	HCCA
CC	GO:0030896	checkpoint clamp complex	IEP	HCCA
BP	GO:0031570	DNA integrity checkpoint signaling	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	HCCA
MF	GO:0035091	phosphatidylinositol binding	IEP	HCCA
BP	GO:0042770	signal transduction in response to DNA damage	IEP	HCCA
BP	GO:0043248	proteasome assembly	IEP	HCCA
BP	GO:0045786	negative regulation of cell cycle	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
MF	GO:0050080	malonyl-CoA decarboxylase activity	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
MF	GO:0061630	ubiquitin protein ligase activity	IEP	HCCA
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140296	general transcription initiation factor binding	IEP	HCCA
BP	GO:1901264	carbohydrate derivative transport	IEP	HCCA
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901988	negative regulation of cell cycle phase transition	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1902555	endoribonuclease complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	127	281

External Links

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Mp5g20110.1

Expression Profile

Co-expression Networks

Functional Annotation