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  5. Mp6g00230.1

Mp6g00230.1


Description : subunit 1 of Pol IV RNA polymerase. subunit 1 of Pol V RNA polymerase


Gene families : OG_01_0002189 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002189_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g00230.1
Cluster HCCA: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
AT2G40030 No alias nuclear RNA polymerase D1B 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031047 gene silencing by RNA IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007066 RNA_pol_Rpb1_3 720 859
IPR007081 RNA_pol_Rpb1_5 1026 1492
IPR000722 RNA_pol_asu 545 709
IPR007083 RNA_pol_Rpb1_4 929 985
IPR007080 RNA_pol_Rpb1_1 17 440
No external refs found!