Mp6g00560.1

Description : pre-mRNA-processing protein (PRP39)

Gene families : OG_01_0002529 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002529_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Mp6g00560.1
Cluster	HCCA: Cluster_104

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zci_09373.1	No alias	pre-mRNA-processing protein (PRP39)	0.02	OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0004402	histone acetyltransferase activity	IEP	HCCA
BP	GO:0006473	protein acetylation	IEP	HCCA
BP	GO:0006475	internal protein amino acid acetylation	IEP	HCCA
MF	GO:0008080	N-acetyltransferase activity	IEP	HCCA
MF	GO:0016407	acetyltransferase activity	IEP	HCCA
MF	GO:0016410	N-acyltransferase activity	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016573	histone acetylation	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	HCCA
BP	GO:0018394	peptidyl-lysine acetylation	IEP	HCCA
CC	GO:0031011	Ino80 complex	IEP	HCCA
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0097346	INO80-type complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR008847	Suf	135	224

External Links

No external refs found!