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  5. Mp6g08160.1

Mp6g08160.1


Description : RNA chaperone (RZ1|GR-RBP)


Gene families : OG_01_0000078 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000078_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g08160.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AT2G37510 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G46020 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G13850 No alias glycine-rich RNA-binding protein 2 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G61030 No alias glycine-rich RNA-binding protein 3 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c12_1830V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
CC GO:0016272 prefoldin complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0035145 exon-exon junction complex IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 121 136
IPR000504 RRM_dom 10 78
No external refs found!