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  5. Mp6g16470.1

Mp6g16470.1


Description : regulatory component RPT2 of 26S proteasome


Gene families : OG_01_0002678 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002678_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp6g16470.1
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
AT2G20140 No alias AAA-type ATPase family protein 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G29040 No alias regulatory particle AAA-ATPase 2A 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre07.g329700 No alias Protein degradation.26S proteasome.regulatory... 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_23220V3.1 No alias AAA-type ATPase family protein 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_3770V3.1 No alias AAA-type ATPase family protein 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_7710V3.1 No alias AAA-type ATPase family protein 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_08989.1 No alias no annotation 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004298 threonine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006928 movement of cell or subcellular component IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0016459 myosin complex IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0070003 threonine-type peptidase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 381 425
IPR032501 Prot_ATP_ID_OB 113 167
IPR003959 ATPase_AAA_core 226 359
No external refs found!