- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : component LHCb1/2/3 of LHC-II complex
Gene families : OG_01_0000051 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000051_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Mp7g05880.1 | |
| Cluster | HCCA: Cluster_11 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G29910 | No alias | chlorophyll A/B binding protein 3 | 0.4 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT1G29920 | No alias | chlorophyll A/B-binding protein 2 | 0.22 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT1G29930 | No alias | chlorophyll A/B binding protein 1 | 0.23 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT2G05070 | No alias | photosystem II light harvesting complex gene 2.2 | 0.27 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT2G34420 | No alias | photosystem II light harvesting complex gene B1B2 | 0.22 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT2G34430 | No alias | light-harvesting chlorophyll-protein complex II subunit B1 | 0.07 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT3G27690 | No alias | photosystem II light harvesting complex gene 2.3 | 0.17 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| AT5G54270 | No alias | light-harvesting chlorophyll B-binding protein 3 | 0.35 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Cre01.g066917 | No alias | Photosynthesis.photophosphorylation.photosystem... | 0.31 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c13_5930V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.38 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c13_7900V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.33 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c18_8100V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.34 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c19_20900V3.1 | No alias | light-harvesting chlorophyll B-binding protein 3 | 0.33 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c21_3950V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.4 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c22_5610V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.06 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c26_6740V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.28 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c2_35930V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.2 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c2_36190V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.07 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c2_36220V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.01 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c2_36380V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.08 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c2_36500V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.07 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c2_36570V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.04 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c3_4100V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.23 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c5_7150V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.07 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3c6_12510V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.11 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Pp3s116_10V3.1 | No alias | photosystem II light harvesting complex gene 2.1 | 0.07 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_04788.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.17 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_05966.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.16 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_05967.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.16 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_05968.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.2 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_05974.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.06 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci | |
| Zci_12461.1 | No alias | component LHCb1/2/3 of LHC-II complex | 0.18 | OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005261 | cation channel activity | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| CC | GO:0005575 | cellular_component | IEP | HCCA |
| BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0006720 | isoprenoid metabolic process | IEP | HCCA |
| BP | GO:0006721 | terpenoid metabolic process | IEP | HCCA |
| BP | GO:0006754 | ATP biosynthetic process | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| BP | GO:0008299 | isoprenoid biosynthetic process | IEP | HCCA |
| MF | GO:0008661 | 1-deoxy-D-xylulose-5-phosphate synthase activity | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009142 | nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009145 | purine nucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009201 | ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009206 | purine ribonucleoside triphosphate biosynthetic process | IEP | HCCA |
| BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009521 | photosystem | IEP | HCCA |
| CC | GO:0009522 | photosystem I | IEP | HCCA |
| CC | GO:0009523 | photosystem II | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| CC | GO:0009538 | photosystem I reaction center | IEP | HCCA |
| CC | GO:0009654 | photosystem II oxygen evolving complex | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010109 | regulation of photosynthesis | IEP | HCCA |
| BP | GO:0010207 | photosystem II assembly | IEP | HCCA |
| MF | GO:0010242 | oxygen evolving activity | IEP | HCCA |
| MF | GO:0015252 | proton channel activity | IEP | HCCA |
| BP | GO:0015979 | photosynthesis | IEP | HCCA |
| BP | GO:0015985 | energy coupled proton transport, down electrochemical gradient | IEP | HCCA |
| BP | GO:0015986 | ATP synthesis coupled proton transport | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| BP | GO:0016114 | terpenoid biosynthetic process | IEP | HCCA |
| MF | GO:0016620 | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor | IEP | HCCA |
| MF | GO:0016744 | transketolase or transaldolase activity | IEP | HCCA |
| MF | GO:0016903 | oxidoreductase activity, acting on the aldehyde or oxo group of donors | IEP | HCCA |
| CC | GO:0019898 | extrinsic component of membrane | IEP | HCCA |
| BP | GO:0022607 | cellular component assembly | IEP | HCCA |
| MF | GO:0030145 | manganese ion binding | IEP | HCCA |
| CC | GO:0032991 | protein-containing complex | IEP | HCCA |
| CC | GO:0033178 | proton-transporting two-sector ATPase complex, catalytic domain | IEP | HCCA |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | HCCA |
| BP | GO:0042548 | regulation of photosynthesis, light reaction | IEP | HCCA |
| BP | GO:0042549 | photosystem II stabilization | IEP | HCCA |
| BP | GO:0043467 | regulation of generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| CC | GO:0045261 | proton-transporting ATP synthase complex, catalytic core F(1) | IEP | HCCA |
| BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
| MF | GO:0046933 | proton-transporting ATP synthase activity, rotational mechanism | IEP | HCCA |
| BP | GO:0065003 | protein-containing complex assembly | IEP | HCCA |
| CC | GO:0098796 | membrane protein complex | IEP | HCCA |
| CC | GO:0110165 | cellular anatomical entity | IEP | HCCA |
| CC | GO:1902494 | catalytic complex | IEP | HCCA |
| CC | GO:1990204 | oxidoreductase complex | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022796 | Chloroa_b-bind | 66 | 231 |
| No external refs found! |