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  5. Mp7g07690.1

Mp7g07690.1


Description : rRNA biogenesis RNA helicase (ROK1)


Gene families : OG_01_0006842 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0006842_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g07690.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
AT3G09720 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre05.g238900 No alias RNA biosynthesis.rRNA biogenesis.RH57 RNA helicase 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c10_21520V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004674 protein serine/threonine kinase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
MF GO:0016435 rRNA (guanine) methyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0036265 RNA (guanine-N7)-methylation IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043461 proton-transporting ATP synthase complex assembly IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0070476 rRNA (guanine-N7)-methylation IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 6 131
IPR001650 Helicase_C 167 275
No external refs found!