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  5. Mp7g08940.1

Mp7g08940.1


Description : component LHCb1/2/3 of LHC-II complex


Gene families : OG_01_0000051 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000051_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Mp7g08940.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT1G29910 No alias chlorophyll A/B binding protein 3 0.23 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29920 No alias chlorophyll A/B-binding protein 2 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT1G29930 No alias chlorophyll A/B binding protein 1 0.16 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G05070 No alias photosystem II light harvesting complex gene 2.2 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34420 No alias photosystem II light harvesting complex gene B1B2 0.12 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT2G34430 No alias light-harvesting chlorophyll-protein complex II subunit B1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G27690 No alias photosystem II light harvesting complex gene 2.3 0.14 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT5G54270 No alias light-harvesting chlorophyll B-binding protein 3 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_5930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.22 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_7900V3.1 No alias photosystem II light harvesting complex gene 2.1 0.17 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.25 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c22_5610V3.1 No alias photosystem II light harvesting complex gene 2.1 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.24 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36190V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36380V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36500V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_36570V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_4100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c5_7150V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_12510V3.1 No alias photosystem II light harvesting complex gene 2.1 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3s116_10V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_04788.1 No alias component LHCb1/2/3 of LHC-II complex 0.11 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05966.1 No alias component LHCb1/2/3 of LHC-II complex 0.19 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05967.1 No alias component LHCb1/2/3 of LHC-II complex 0.2 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05968.1 No alias component LHCb1/2/3 of LHC-II complex 0.23 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_05974.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12461.1 No alias component LHCb1/2/3 of LHC-II complex 0.21 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004109 coproporphyrinogen oxidase activity IEP HCCA
MF GO:0004418 hydroxymethylbilane synthase activity IEP HCCA
MF GO:0004618 phosphoglycerate kinase activity IEP HCCA
MF GO:0004655 porphobilinogen synthase activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005216 ion channel activity IEP HCCA
MF GO:0005261 cation channel activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP HCCA
MF GO:0008883 glutamyl-tRNA reductase activity IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
MF GO:0010242 oxygen evolving activity IEP HCCA
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP HCCA
BP GO:0015986 ATP synthesis coupled proton transport IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP HCCA
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP HCCA
MF GO:0016744 transketolase or transaldolase activity IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016774 phosphotransferase activity, carboxyl group as acceptor IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
MF GO:0030145 manganese ion binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0034220 ion transmembrane transport IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043603 cellular amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044267 cellular protein metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
MF GO:0070402 NADPH binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0098655 cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 62 229
No external refs found!