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  5. AT1G71490

AT1G71490


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0012162 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G71490
Cluster HCCA: Cluster_101


Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000182 rDNA binding IEP HCCA
BP GO:0000280 nuclear division IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008097 5S rRNA binding IEP HCCA
BP GO:0009410 response to xenobiotic stimulus IEP HCCA
BP GO:0009887 animal organ morphogenesis IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010638 positive regulation of organelle organization IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0031590 wybutosine metabolic process IEP HCCA
BP GO:0031591 wybutosine biosynthetic process IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
BP GO:0033043 regulation of organelle organization IEP HCCA
BP GO:0033044 regulation of chromosome organization IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0048285 organelle fission IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0051052 regulation of DNA metabolic process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051130 positive regulation of cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
MF GO:0080084 5S rDNA binding IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 420 443
IPR002885 Pentatricopeptide_repeat 522 545
IPR002885 Pentatricopeptide_repeat 319 343
IPR002885 Pentatricopeptide_repeat 181 208
IPR002885 Pentatricopeptide_repeat 112 154
IPR002885 Pentatricopeptide_repeat 447 494
IPR002885 Pentatricopeptide_repeat 209 255
IPR002885 Pentatricopeptide_repeat 346 388
PLAZA 3.0 Dicots AT1G71490