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  5. Pp3c10_25280V3.1

Pp3c10_25280V3.1


Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases


Gene families : OG_01_0000342 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c10_25280V3.1
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11570V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_13900V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c11_14490V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c13_14630V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3970V3.1 No alias No annotation 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c14_3980V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_13700V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c15_13750V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.09 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_17860V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c16_6050V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c1_290V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c25_2990V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_18826V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_29370V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c2_390V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c3_18830V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.04 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c4_24900V3.1 No alias No annotation 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c6_15720V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.02 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Pp3c9_12701V3.1 No alias DNA binding;nucleotide binding;nucleic acid... 0.05 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006313 transposition, DNA-mediated IEP HCCA
BP GO:0006464 cellular protein modification process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032196 transposition IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
InterPro domains Description Start Stop
IPR006134 DNA-dir_DNA_pol_B_multi_dom 323 692
IPR006133 DNA-dir_DNA_pol_B_exonuc 22 247
No external refs found!