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  5. AT1G75510

AT1G75510


Description : Transcription initiation factor IIF, beta subunit


Gene families : OG_01_0004563 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0004563_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G75510
Cluster HCCA: Cluster_38


Type GO Term Name Evidence Source
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation RCA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005674 transcription factor TFIIF complex ISS Interproscan
CC GO:0005739 mitochondrion IDA Interproscan
BP GO:0006366 transcription by RNA polymerase II RCA Interproscan
BP GO:0006367 transcription initiation from RNA polymerase II promoter ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP HCCA
BP GO:0001676 long-chain fatty acid metabolic process IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP HCCA
MF GO:0005092 GDP-dissociation inhibitor activity IEP HCCA
MF GO:0005093 Rab GDP-dissociation inhibitor activity IEP HCCA
CC GO:0005829 cytosol IEP HCCA
CC GO:0008180 COP9 signalosome IEP HCCA
CC GO:0008540 proteasome regulatory particle, base subcomplex IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009612 response to mechanical stimulus IEP HCCA
BP GO:0010193 response to ozone IEP HCCA
BP GO:0010225 response to UV-C IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
MF GO:0015645 fatty acid ligase activity IEP HCCA
MF GO:0016405 CoA-ligase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0016878 acid-thiol ligase activity IEP HCCA
MF GO:0017111 nucleoside-triphosphatase activity IEP HCCA
MF GO:0019003 GDP binding IEP HCCA
BP GO:0019722 calcium-mediated signaling IEP HCCA
BP GO:0019932 second-messenger-mediated signaling IEP HCCA
MF GO:0030695 GTPase regulator activity IEP HCCA
CC GO:0031300 intrinsic component of organelle membrane IEP HCCA
CC GO:0031301 integral component of organelle membrane IEP HCCA
CC GO:0031306 intrinsic component of mitochondrial outer membrane IEP HCCA
CC GO:0031307 integral component of mitochondrial outer membrane IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
BP GO:0032270 positive regulation of cellular protein metabolic process IEP HCCA
CC GO:0032592 integral component of mitochondrial membrane IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051865 protein autoubiquitination IEP HCCA
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP HCCA
CC GO:0098573 intrinsic component of mitochondrial membrane IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
BP GO:2000539 regulation of protein geranylgeranylation IEP HCCA
BP GO:2000541 positive regulation of protein geranylgeranylation IEP HCCA
BP GO:2001020 regulation of response to DNA damage stimulus IEP HCCA
InterPro domains Description Start Stop
IPR040450 TFIIF_beta_HTH 188 251
PLAZA 3.0 Dicots AT1G75510