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  5. Pp3c11_14450V3.1

Pp3c11_14450V3.1


Description : splicing factor, putative


Gene families : OG_01_0003640 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0003640_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_14450V3.1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT5G64270 No alias splicing factor, putative 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre12.g494100 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp5g19650.1 No alias component SF3B1 of splicing factor 3B complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_12540.1 No alias component SF3B1 of splicing factor 3B complex 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
InterPro domains Description Start Stop
IPR015016 SF3b_su1 310 437
No external refs found!