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  5. Pp3c11_22570V3.1

Pp3c11_22570V3.1


Description : BAH domain ;TFIIS helical bundle-like domain


Gene families : OG_01_0002445 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0002445_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_22570V3.1
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT3G48050 No alias BAH domain ;TFIIS helical bundle-like domain 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT3G48060 No alias BAH domain ;TFIIS helical bundle-like domain 0.08 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Cre06.g292650 No alias No description available 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g16160.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp4g16230.1 No alias no hits & (original description: none) 0.07 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Zci_00233.1 No alias no hits & (original description: none) 0.01 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!