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  5. Pp3c11_8530V3.1

Pp3c11_8530V3.1


Description : HMG (high mobility group) box protein


Gene families : OG_01_0005988 (OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci) Phylogenetic Tree(s): OG0005988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c11_8530V3.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT4G11080 No alias HMG (high mobility group) box protein 0.06 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
AT4G23800 No alias HMG (high mobility group) box protein 0.15 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.1 OrthoFinder output from Ath, Cre, Mpo, Ppa and Zci

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006275 regulation of DNA replication IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034622 cellular protein-containing complex assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0043933 protein-containing complex subunit organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 145 206
IPR009071 HMG_box_dom 261 327
IPR009071 HMG_box_dom 405 473
No external refs found!